Package: HaploSim 1.8.4.2
HaploSim: Functions to Simulate Haplotypes
Simulate haplotypes through meioses. Allows specification of population parameters.
Authors:
HaploSim_1.8.4.2.tar.gz
HaploSim_1.8.4.2.zip(r-4.5)HaploSim_1.8.4.2.zip(r-4.4)HaploSim_1.8.4.2.zip(r-4.3)
HaploSim_1.8.4.2.tgz(r-4.4-any)HaploSim_1.8.4.2.tgz(r-4.3-any)
HaploSim_1.8.4.2.tar.gz(r-4.5-noble)HaploSim_1.8.4.2.tar.gz(r-4.4-noble)
HaploSim_1.8.4.2.tgz(r-4.4-emscripten)HaploSim_1.8.4.2.tgz(r-4.3-emscripten)
HaploSim.pdf |HaploSim.html✨
HaploSim/json (API)
| # Install 'HaploSim' in R: |
| install.packages('HaploSim', repos = c('https://albartcoster.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:136aa7d9a5. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 25 2024 |
| R-4.5-win | OK | Aug 25 2024 |
| R-4.5-linux | OK | Aug 25 2024 |
| R-4.4-win | OK | Aug 25 2024 |
| R-4.4-mac | OK | Aug 25 2024 |
| R-4.3-win | OK | Aug 25 2024 |
| R-4.3-mac | OK | Aug 25 2024 |
Exports:AssignQTLbuildhPedigreegetAllhaploListhPed2PedListQTLRemoveHomozygotesSampleBaseHaplotypeSampleHaplotypeSampleHaplotypesSamplePedigreeshowvalidhaploListObject
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Assigns QTL to a list of Haplotypes | AssignQTL ListQTL |
| Build a haplotype pedrigree from a haplotype list | buildhPedigree |
| Get alleles | getAll |
| Function to create objects of class 'haploList' | haploList |
| Class "haploList" | c,haploList-method haploList-class print,haploList-method show,haploList-method [,haploList,ANY,missing-method |
| Class "haplotype" ~~~ | haplotype-class print,haplotype-method show,haplotype-method |
| Transform a haplotype pedigree into a pedigree. | hPed2Ped |
| Remove the homozygotic snp loci from a list of haplotypes | RemoveHomozygotes |
| Simulate a base population haplotype | SampleBaseHaplotype |
| Simulate a haplotype | SampleHaplotype |
| Simulate a list of haplotypes | SampleHaplotypes |
| Simulate a haplotypes in a pedigree | SamplePedigree |
| Function to validate an object of class 'haploList' | validhaploListObject |
